ABCIS: Advanced Biology, Chemistry, Informatics Studio

  • All
  • Y Sequence Analysis
  • Y Structure Modeling
  • Z Ligand Interaction

  • PAT

    Protein Analysis Toolkit for integrated biocomputing on the web.
    Jerome Gracy and Laurent Chiche (2005), Nucleic Acids ResearchWeb Server issue, 33, W65-71.

    Additional Sponsors: ACI-IMPBio

    • Y Sequence Analysis
    • Y Structure Modeling

  • @TOME V3

    Bioinformatics Tools Server, a pipeline for comparative modeling of protein-ligand complexes.
    Pons JL & Labesse G.(2009) Nucleic Acids Research ; doi : 10.1093/nar/gkp368

    Additional Sponsors : ACI-IMPBio

    • Y Structure Modeling
    • Z Ligand Interaction

  • TITO

    A tool for incremental threading optimization in order to help alignment and molecular modeling at any sequence similarity level.
    Labesse G. and Mornon JP, (1998) Bioinformatics14, 206-211

    • Y Structure Modeling

  • VITO

    An interactive tool for homology modelling and protein family study coupling a full featured alignment editor with a complete 3D viewer. ViTO has its own macro language.
    Catherinot, V and Labesse, G.(2004) Bioinformatics20,3694-3696

    Additional Sponsors : Inserm (AIGE)

    • Y Structure Modeling

  • P-SEA

    A program for secondary structure assignment from Ca
    Labesse G., Colloc'h N., Pothier J. and Mornon J.-P., (1997) 
    CABIOS vol 13., no. 3, pages 291-295

    • Y Structure Modeling

  • EvDTree

    EvDTree creates structure-dependent substitution profiles based on decision tree classification of 3D environments.
    Gelly, J.-C., Chiche, L. and Gracy, J. (2005), BMC Bioinformatics 6:4

    Additional Sponsors : Action, Bioinformatique, Inter-EPST

    • Y Structure Modeling

  • EDMON v3

    Endocrine Disruptor MONitoring - A computational tool to study interactions between nuclear hormone receptors and endocrine-disrupting chemicals
    Delfosse et al, PNAS, 2012 - Doi : 10.1073/pnas.1203574109

    Additional Sponsors : ANR BISCOT

    • Y Structure Modeling
    • Z Ligand Interaction

  • CoSiAn

    CoSiAn (Combinatorial Similarity Analysis)
    Similarity analysis between a reference ligand and a bank of ligands to screen, using a combination of 2D and 3D similarity tools.

    Victor Reys - Violaine Moreau - Gilles Labesse

    • Y Structure Modeling
    • Z Ligand Interaction

  • VITO2

    An interactive online or local Java tool for homology modelling and protein family study coupling a full featured alignment editor with a complete 3D viewer.

    Grand F, Pons JL, Labesse, G (2016)

    • Y Structure Modeling

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