![Join the qbio Master's Program [Quantitative Biology: Molecular Mechanisms of Living Systems (parcours IDIL)] Q&A Session on Monday, February 10!](https://www.cbs.cnrs.fr/cache/mod_bt_contentslider/3e10f899c82679e1992f2a701c367d27-qbio_IDIL_quadri_16x10.png "Join the qbio Master's Program [Quantitative Biology: Molecular Mechanisms of Living Systems (parcours IDIL)] Q&A Session on Monday, February 10!")
Publications
2024
Measuring Bacterial Flagellar Motor Dynamics via a Bead Assay
Hoffmann WH, Biquet-Bisquert A, Pedaci F, Nord AL, Methods Mol Biol, 2024
Molecular model of a bacterial flagellar motor in situreveals a parts-list of protein adaptations to increase torque
Drobnic T, Cohen EJ, Calcraft T, Alzheimer M, Froschauer K, Svensson S, Hoffmann WH, Singh N, Garg SG, Henderson L, Umrekar TR, Nans A, Ribardo D, Pedaci F, Nord AL, Hochberg GKA, Hendrixson DR, Sharma CM, Rosenthal PB, Beeby M, bioRxiv, 2024
Split Reporters Facilitate Monitoring of Gene Expression and Peptide Production in Linear Cell-Free Transcription-Translation Systems
Levrier A, Capin J, Mayonove P, Karpathakis II, Voyvodic P, DeVisch A, Zuniga A, Cohen-Gonsaud M, Cabantous S, Noireaux V, Bonnet J, ACS Synth Biol, 2024
Spatiotemporal dynamics of the proton motive force on single bacterial cells
Biquet-Bisquert A, Carrio B, Meyer N, Fernandes TFD, Abkarian M, Seduk F, Magalon A, Nord AL, Pedaci F, Sci Adv, 2024
2023
2022
Evaluating and mitigating clinical samples matrix effects on TX-TL cell-free performance
Voyvodic PL, Conejero I, Mesmoudi K, Renard E, Courtet P, Cattoni DI, Bonnet J, Sci Rep, 2022
PeroxiHUB: A Modular Cell-Free Biosensing Platform Using H2O2as Signal Integrator
Soudier P, Zuniga A, Duigou T, Voyvodic PL, Bazi-Kabbaj K, Kushwaha M, Vendrell JA, Solassol J, Bonnet J, Faulon JL, ACS Synth Biol, 2022
A modular spring-loaded actuator for mechanical activation of membrane proteins
Mills A, Aissaoui N, Maurel D, Elezgaray J, Morvan F, Vasseur JJ, Margeat E, Quast RB, Lai-Kee-Him J, Saint N, Benistant C, Nord A, Pedaci F, Bellot G, Nat Commun, 2022
Dynamic stiffening of the flagellar hook
Nord AL, Biquet-Bisquert A, Abkarian M, Pigaglio T, Seduk F, Magalon A, Pedaci F, Nat Commun, 2022
Relaxation time asymmetry in stator dynamics of the bacterial flagellar motor
Perez-Carrasco R, Franco-Onate MJ, Walter JC, Dorignac J, Geniet F, Palmeri J, Parmeggiani A, Walliser NO, Nord AL, Sci Adv, 2022
Editorial: Flagellar Motors and Force Sensing in Bacteria
Baker MAB, Kojima S, Nord AL, Partridge JD, Front Microbiol, 2022
Differentially Optimized Cell-Free Buffer Enables Robust Expression from Unprotected Linear DNA in Exonuclease-Deficient Extracts
Batista AC, Levrier A, Soudier P, Voyvodic PL, Achmedov T, Reif-Trauttmansdorff T, DeVisch A, Cohen-Gonsaud M, Faulon JL, Beisel CL, Bonnet J, Kushwaha M, ACS Synth Biol, 2022
2021
Programmable receptors enable bacterial biosensors to detect pathological biomarkers in clinical samples
Chang HJ, Zuniga A, Conejero I, Voyvodic PL, Gracy J, Fajardo-Ruiz E, Cohen-Gonsaud M, Cambray G, Pageaux GP, Meszaros M, Meunier L, Bonnet J, Nat Commun, 2021
Molecular structure of the intact bacterial flagellar basal body
Johnson S, Furlong EJ, Deme JC, Nord AL, Caesar JJE, Chevance FFV, Berry RM, Hughes KT, Lea SM, Nat Microbiol, 2021
The Dynamic Ion Motive Force Powering the Bacterial Flagellar Motor
Biquet-Bisquert A, Labesse G, Pedaci F, Nord AL, Front Microbiol, 2021
2020
Speech can produce jet-like transport relevant to asymptomatic spreading of virus
Abkarian M, Mendez S, Xue N, Yang F, Stone HA, Proc Natl Acad Sci USA, 2020
High-Resolution Photonic Force Microscopy Based on Sharp Nanofabricated Tips
Desgarceaux R, Santybayeva Z, Battistella E, Nord AL, Braun-Breton C, Abkarian M, Marago OM, Charlot B, Pedaci F, Nano Lett, 2020
The Brownian and Flow-Driven Rotational Dynamics of a Multicomponent DNA Origami-Based Rotor
Ahmadi Y, Nord AL, Wilson AJ, Hutter C, Schroeder F, Beeby M, Barii I, Small, 2020
Improved backscattering detection in photonic force microscopy near dielectric surfaces with cylindrical vector beams
Donato MG, Patti F, Saija R, AntoniaIati M, Gucciardi PG, Pedaci F, Strangi G, Marago OM, JQSRT, 2020
Mechanisms and dynamics of the Bacterial Flagellar Motor
Nord AL, Pedaci F, Physical Microbiology. Advances in Experimental Medicine and Biology, 2020
2019
Load-dependent adaptation near zero load in the bacterial flagellar motor
Nirody JA, Nord AL, Berry RM, J R Soc Interface, 2019
Metabolic perceptrons for neural computing in biological systems
Pandi A, Koch M, Voyvodic PL, Soudier P, Bonnet J, Kushwaha M, Faulon JL, Nat Commun, 2019
Microfluidic blood vasculature replicas using backside lithography
Fenech M, Girod V, Claveria V, Meance S, Abkarian M, Charlot B, Lab Chip, 2019
Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors
Voyvodic PL, Pandi A, Koch M, Conejero I, Valjent E, Courtet P, Renard E, Faulon JL, Bonnet J, Nat Commun, 2019
2018
Flow-Induced Transitions of Red Blood Cell Shapes under Shear
Mauer J, Mendez S, Lanotte L, Nicoud F, Abkarian M, Gompper G, Fedosov DA, Phys Rev Lett, 2018
Sequential Membrane Rupture and Vesiculation during Plasmodium berghei Gametocyte Egress from the Red Blood Cell
Andreadaki M, Hanssen E, Deligianni E, Claudet C, Wengelnik K, Mollard V, McFadden GI, Abkarian M, Braun-Breton C, Siden-Kiamos I, Sci Rep, 2018
Quantifying the Precision of Single-Molecule Torque and Twist Measurements Using Allan Variance
van Oene MM, Ha S, Jager T, Lee M, Pedaci F, Lipfert J, Dekker N, Bioph. J, 2018
Kinetic analysis methods applied to single motor protein trajectories
Nord A, Pols AF, Depken M, Pedaci F, Phys. Chem. Chem. Phys, 2018
Talbot displacement lithography with soft elastomeric conformal phase masks
Desgarceaux R, Pedaci F, Charlot B, IEEE Symposium on Design, Test, Integration & Packaging of MEMS and MOEMS, 2018
Blood rheological abnormalities in sickle cell anemia
Connes P, Renoux C, Romana M, Abkarian M, Joly P, Martin C, Hardy-Dessources MD, Ballas SK, Clin Hemorheol Microcirc, 2018
2017
Catch bond drives stator mechanosensitivity in the bacterial flagellar motor
Nord AL, Gachon E, Perez-Carrasco R, Nirody JA, Barducci A, Berry RM, Pedaci F, Proc Natl Acad Sci USA, 2017
Role of red cells and plasma composition on blood sessile droplet evaporation
Lanotte L, Laux D, Charlot B, Abkarian M, Phys Rev E, 2017
Microbially derived biosensors for diagnosis, monitoring and epidemiology
Chang HJ, Voyvodic PL, Zuniga A, Bonnet J, Microb Biotechnol, 2017
Sinking a Granular Raft
Protiere S, Josserand C, Aristoff JM, Stone HA, Abkarian M, Phys Rev Lett, 2017
Impact of fluorescent protein fusions on the bacterial flagellar motor
Heo M, Nord AL, Chamousset D, van Rijn E, Beaumont HJE, Pedaci F, Sci. Rep, 2017
Applying torque to the Escherichia coli flagellar motor using magnetic tweezers
van Oene MM, Dickinson LE, Cross B, Pedaci F, Lipfert J, Dekker NH, Sci. Rep, 2017
Optical Torque Wrench Design and Calibration
Santybayeva Z, Pedaci F, Methods Mol Biol, 2017
2016
Red cells' dynamic morphologies govern blood shear thinning under microcirculatory flow conditions
Lanotte L, Mauer J, Mendez S, Fedosov DA, Fromental JM, Claveria V, Nicoud F, Gompper G, Abkarian M, Proc Natl Acad Sci USA, 2016
Clusters of red blood cells in microcapillary flow: hydrodynamic versus macromolecule induced interaction
Claveria V, Aouane O, Thiebaud M, Abkarian M, Coupier G, Misbah C, John T, Wagner C, Soft Matter, 2016
Fabrication of quartz microcylinders by laser interference lithography for angular optical tweezers
Santybayeva Z, Meghit A, Desgarceaux E, Teissier R, Pichot F, de Marin C, Charlot B, Pedaci F, J Micro Nanolith MEMS MOEMS, 2016
The dynamics of interacting folds under biaxial compressive stresses
Shin H, Dixit AC, Stone HA, Abkarian M, Kim P, Soft Matter, 2016
Transient pauses of the bacterial flagellar motor at low load
Nord AL, Pedaci F, Berry RM, New J. Phys, 2016
2015
Red Blood Cell Spectrin Skeleton in the Spotlight
Braun-Breton C, Abkarian M, Trends Parasitol, 2015
Dynamics of colloid accumulation under flow over porous obstacles
Robert de Saint Vincent M, Abkarian M, Tabuteau H, Soft Matter, 2015
Torque spectroscopy for the study of rotary motion in biological systems
Lipfert J, van Oene MM, Lee M, Pedaci F, Dekker NH, Chem Rev, 2015
A simple model to understand the effect of membrane shear elasticity and stress-free shape on the motion of red blood cells in shear flow
Dupire J, Abkarian M, Viallat A, Soft Matter, 2015
Microfluidic study of enhanced deposition of sickle cells at acute corners
Loiseau E, Massiera G, Mendez S, Martinez PA, Abkarian M, Biophys J, 2015
Corrigendum: Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids
Lipfert J, Wiggin M, Kerssemakers JW, Pedaci F, Dekker NH, Nat Commun, 2015
Biological Magnetometry: Torque on Superparamagnetic Beads in Magnetic Fields
van Oene MM, Dickinson LE, Pedaci F, Kober M, Dulin D, Lipfert J, Dekker NH, Phys Rev Lett, 2015
2014
Red blood cell: from its mechanics to its motion in shear flow
Viallat A, Abkarian M, Int J Lab Hematol, 2014
Curling and rolling dynamics of naturally curved ribbons
Arriagada OA, Massiera G, Abkarian M, Soft Matter, 2014
Efficient illumination for microsecond tracking microscopy
Dulin D, Barland S, Hachair X, Pedaci F, PLoS ONE, 2014
2013
Capillary force on a micrometric sphere trapped at a fluid interface exhibiting arbitrary curvature gradients
Blanc C, Fedorenko D, Gross M, In M, Abkarian M, Gharbi MA, Fournier JB, Galatola P, Nobili M, Phys Rev Lett, 2013
Gravity-induced encapsulation of liquids by destabilization of granular rafts
Abkarian M, Protiere S, Aristoff JM, Stone HA, Nat Commun, 2013
2012
2011
Hierarchical folding of elastic membranes under biaxial compressive stress
Kim P, Abkarian M, Stone HA, Nat Mater, 2011
Multiscale approach to link red blood cell dynamics, shear viscosity, and ATP release
Forsyth AM, Wan J, Owrutsky PD, Abkarian M, Stone HA, Proc Natl Acad Sci USA, 2011
A novel mechanism for egress of malarial parasites from red blood cells
Abkarian M, Massiera G, Berry L, Roques M, Braun-Breton C, Blood, 2011
2010
2009
2008
2007
Dissolution arrest and stability of particle-covered bubbles
Abkarian M, Subramaniam AB, Kim SH, Larsen RJ, Yang SM, Stone HA, Phys Rev Lett, 2007
Swinging of red blood cells under shear flow
Abkarian M, Faivre M, Viallat A, Phys Rev Lett, 2007
2006
Mechanics of interfacial composite materials
Subramaniam AB, Abkarian M, Mahadevan L, Stone HA, Langmuir, 2006
Microstructure, morphology, and lifetime of armored bubbles exposed to surfactants
Subramaniam AB, Mejean C, Abkarian M, Stone HA, Langmuir, 2006
Geometrical focusing of cells in a microfluidic device: an approach to separate blood plasma
Faivre M, Abkarian M, Bickraj K, Stone HA, Biorheology, 2006
Dynamics of viscous vesicles in shear flow
Mader MA, Vitkova V, Abkarian M, Viallat A, Podgorski T, Eur Phys J E Soft Matter, 2006
High-speed microfluidic differential manometer for cellular-scale hydrodynamics
Abkarian M, Faivre M, Stone HA, Proc Natl Acad Sci USA, 2006
2005
Colloid science: non-spherical bubbles
Subramaniam AB, Abkarian M, Mahadevan L, Stone HA, Nature, 2005
Microfluidic flow focusing: drop size and scaling in pressure versus flow-rate-driven pumping
Ward T, Faivre M, Abkarian M, Stone HA, Electrophoresis, 2005
Controlled assembly of jammed colloidal shells on fluid droplets
Subramaniam AB, Abkarian M, Stone HA, Nat Mater, 2005
Dynamics of vesicles in a wall-bounded shear flow
Abkarian M, Viallat A, Biophys J, 2005
2004
Colloidal crystallization and banding in a cylindrical geometry
Abkarian M, Nunes J, Stone HA, J Am Chem Soc, 2004
Giant lipid vesicles filled with a gel: shape instability induced by osmotic shrinkage
Viallat A, Dalous J, Abkarian M, Biophys J, 2004
