Jerome Bonnet
Biologie Synthétique
04 67 41 77 09
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Liste des publications
2024
2023
2022
Computational Methods for the Design of Recombinase Logic Circuits with Adaptable Circuit Specifications
Zuniga A, Bonnet J, Guiziou S, Methods Mol Biol, 2022
A rapid and standardized workflow for functional assessment of bacterial biosensors in fecal samples
Zuniga A, Munoz-Guamuro G, Boivineau L, Mayonove P, Conejero I, Pageaux GP, Altwegg R, Bonnet J, Front Bioeng Biotechnol, 2022
A rapid and standardized workflow for functional assessment of bacterial biosensors in fecal samples
Zfaniga A, Munoz-Guamuro G, Boivineau L, Mayonove P, Conejero I, Pageaux GP, Altwegg R, Bonnet J, Front Bioeng Biotechnol, 2022
Evaluating and mitigating clinical samples matrix effects on TX-TL cell-free performance
Voyvodic PL, Conejero I, Mesmoudi K, Renard E, Courtet P, Cattoni DI, Bonnet J, Sci Rep, 2022
Cell-Free Protein Synthesis from Exonuclease-Deficient Cellular Extracts Utilizing Linear DNA Templates
Sabeti Azad M, Cardoso Batista A, Faulon JL, Beisel CL, Bonnet J, Kushwaha M, J Vis Exp, 2022
PeroxiHUB: A Modular Cell-Free Biosensing Platform Using H2O2as Signal Integrator
Soudier P, Zuniga A, Duigou T, Voyvodic PL, Bazi-Kabbaj K, Kushwaha M, Vendrell JA, Solassol J, Bonnet J, Faulon JL, ACS Synth Biol, 2022
Differentially Optimized Cell-Free Buffer Enables Robust Expression from Unprotected Linear DNA in Exonuclease-Deficient Extracts
Batista AC, Levrier A, Soudier P, Voyvodic PL, Achmedov T, Reif-Trauttmansdorff T, DeVisch A, Cohen-Gonsaud M, Faulon JL, Beisel CL, Bonnet J, Kushwaha M, ACS Synth Biol, 2022
2021
Engineered l-Lactate Responding Promoter System Operating in Glucose-Rich and Anoxic Environments
Zuniga A, Camacho M, Chang HJ, Fristot E, Mayonove P, Hani EH, Bonnet J, ACS Synth Biol, 2021
Programmable receptors enable bacterial biosensors to detect pathological biomarkers in clinical samples
Chang HJ, Zuniga A, Conejero I, Voyvodic PL, Gracy J, Fajardo-Ruiz E, Cohen-Gonsaud M, Cambray G, Pageaux GP, Meszaros M, Meunier L, Bonnet J, Nat Commun, 2021
Computational Methods for the Design of Recombinase Logic Circuits
Guiziou S, Bonnet J, Methods Mol Biol, 2021
2020
Rational programming of history-dependent logic in cellular populations
Zuniga A, Guiziou S, Mayonove P, Meriem ZB, Camacho M, Moreau V, Ciandrini L, Hersen P, Bonnet J, Nat Commun, 2020
Synthetic receptors to understand and control cellular functions
Chang HJ, Bonnet J, Meth Enzymol, 2020
2019
Metabolic perceptrons for neural computing in biological systems
Pandi A, Koch M, Voyvodic PL, Soudier P, Bonnet J, Kushwaha M, Faulon JL, Nat Commun, 2019
Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors
Voyvodic PL, Pandi A, Koch M, Conejero I, Valjent E, Courtet P, Renard E, Faulon JL, Bonnet J, Nat Commun, 2019
Structural basis for chemically-induced homodimerization of a single domain antibody
Lesne J, Chang HJ, De Visch A, Paloni M, Barthe P, Guichou JF, Mayonove P, Barducci A, Labesse G, Bonnet J, Cohen-Gonsaud M, Sci Rep, 2019
Hierarchical composition of reliable recombinase logic devices
Guiziou S, Mayonove P, Bonnet J, Nat Commun, 2019
2018
An engineered device for indoleacetic acid production under quorum sensing signals enables Cupriavidus pinatubonensis JMP134 to stimulate plant growth
Zuniga A, De la Fuente F, Federici F, Lionne C, Bonnet J, de Lorenzo V, Gonzalez B, ACS Synth Biol, 2018
An automated design framework for multicellular recombinase logic
Guiziou S, Ulliana F, Moreau V, Leclere M, Bonnet J, ACS Synth Biol, 2018
2017
2016
A part toolbox to tune genetic expression in Bacillus subtilis
Guiziou S, Sauveplane V, Chang HJ, Clerte C, Declerck N, Jules M, Bonnet J, Nucleic Acids Res, 2016
Analytic framework for a stochastic binary biological switch
Innocentini GC, Guiziou S, Bonnet J, Radulescu O, Phys Rev E, 2016
2015
2013
Switches, switches, every where, in any drop we drink
Bonnet J, Endy D, Mol Cell, 2013
Amplifying genetic logic gates
Bonnet J, Yin P, Ortiz ME, Subsoontorn P, Endy D, Science, 2013